Protected Nucleosides
5'-DMT-2'-O-propargyl-N4-acetylcytidine
Quick view. An N4-acetyl, 5'-O-DMT-protected 2'-O-propargyl cytidine intermediate for structure-specific nucleoside derivatization research. CAS 1498305-50-2. Catalog target purity: By inquiry. Availability: Inquiry only — contact OROGO to confirm current availability.
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Product profile
5'-DMT-2'-O-propargyl-N4-acetylcytidine is classified as protected nucleosides (Formula C35H35N3O8; molecular weight 625.70 g/mol).
5'-DMT-2'-O-propargyl-N4-acetylcytidine — Protected, alkyne-bearing cytidine intermediate for structure-specific nucleoside derivatization and downstream building-block research.
For 5'-DMT-2'-O-propargyl-N4-acetylcytidine, copper-catalyzed, copper-free or inverse-electron-demand click conditions can affect sensitive oligonucleotides differently; residual metal, solvent and purification strategy should be controlled.
Names and search terms
Confirmed or normalized name variants
- N4-Ac-5'-O-DMT-2'-O-propargyl-cytidine
- N4-Ac-DMT-2'-O-propargyl-C
Useful catalog search terms
- CAS 1498305-50-2
Physicochemical data
| Nucleobase | Cytidine |
|---|---|
| Sugar modification | 2'-O-propargyl |
| Protection pattern | N4-acetyl; 5'-O-DMT |
| 3' position | Hydroxyl; no CE phosphoramidite group |
| PubChem CID | 171390959 |
| InChIKey | WTXRMORXMCBUCK-WXQJYUTRSA-N |
| InChI | InChI=1S/C35H35N3O8/c1-5-21-44-32-31(40)29(46-33(32)38-20-19-30(36-23(2)39)37-34(38)41)22-45-35(24-9-7-6-8-10-24,25-11-15-27(42-3)16-12-25)26-13-17-28(43-4)18-14-26/h1,6-20,29,31-33,40H,21-22H2,2-4H3,(H,36,37,39,41)/t29-,31-,32-,33-/m1/s1 |
| SMILES | C#CCO[C@@H]1[C@H](O)[C@@H](COC(c2ccccc2)(c2ccc(OC)cc2)c2ccc(OC)cc2)O[C@H]1n1ccc(NC(C)=O)nc1=O |
Release documentation
The current specification defines the analytical method and acceptance criteria; the released lot result is reported on the CoA.
Additional HPLC, MS or NMR documentation can be agreed during technical review where available.
Product-specific evaluation notes
Potential advantages
- Click-compatible handles separate oligonucleotide synthesis from late-stage labeling, which helps screen multiple payloads from a common intermediate.
Method limitations
- Copper-catalyzed, copper-free or inverse-electron-demand click conditions can affect sensitive oligonucleotides differently; residual metal, solvent and purification strategy should be controlled.
These points describe 5'-DMT-2'-O-propargyl-N4-acetylcytidine or its named chemical feature. Broader product-family guidance is maintained on the category page.
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Feature and workflow background
These publications discuss a broader chemistry feature or workflow identified from the catalog name or product family. They are background reading only, not evidence for the exact OROGO product, supplied form, lot specification, availability or performance.
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Technology platforms
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